In end of April 2012 the ancient Gotlander hunter gatherers genome was published by the University of Uppsala. I will now provide an ADMIXTURE based analysis of these samples using project and public published population panels.
The samples was downloaded from authors website and then subject to most of the quality controls as done by the authors. I extracted the relevant SNP for the Ajv's and Ire8 ending up with 22k SNP using three individuals combined into a composite individual.
The composite sample was then subject to control ADMIXTURE and MDS analysis using "haplotized" (phased in BEAGLE) French, Yoruba and Han's as reference populations. The composite individual clustered entirely with French.
I then merged the composite individual with an "haplotized" (phased in BEAGLE) European panel with populations all within the European continent from different public available population panels and run it through ADMIXTURE at K3. Closely related individuals in the panel was removed. One Russian was removed because of odd clustering, reason unknown.
The result was then averaged over populations to get an overview: